| Mon 11 |
| Data Analysis of Proteomics Assays |
| 13:45-14:00 | Arne Elofsson | Welcome |
| 14:00-14:30 | Ruedi Aebersold | Searching and Mining of Proteomic SWATH-MS datasets |
| 14:30-15:00 | Lennart Martens | Snakes and ladders: where do proteomics assays fail and how can we fix them? |
| 15:00-15:15 | Janne Lehtiö | Genome-wide proteomics: A tool to define the human protein coding genome |
| Coffee |
| 15:45-16:15 | Edward Marcotte | Insights from proteomics into protein organization, evolution, and genetic disease |
| 16:15-16:45 | Roman Zubarev | Pathway Analysis in Expression Proteomics |
| 16:45-17:00 | Paul Horton | MoiraiSP: a novel mitochondrial cleavage site predictor |
| 17:00-19:00 | Reception and poster session
(Presentation by odd numbers) |
|
Tue June 12 |
| RNA Bioinformatics |
| 09:30-10:00 | Bob Darnell | RNA regulatory maps |
| 10:00-10:30 | Jan Gorodkin | Towards the search for RNA-RNA interaction based networks |
| 10:30-10:45 | Mihaela Zavolan | A biophysical model to infer canonical and
non-canonical microRNA-target interaction |
| Coffee |
| 11:15-11:45 | Eric Westhof | The Detection of the Architectural Modules of RNA
and Recent Progress in RNA Modelling |
| 11:45-12:15 | Samuel Flores | A structural and dynamical model of human telomerase |
| 12:15-12:30 | Nanjiang Shu | Computational analysis of membrane protein topology evolution |
| LUNCH |
| Keynotes Session |
| 13:30-14:30 | Anders Krogh | On the accuracy of short read mapping |
| 14:30-15:30 | Kerstin Lindblad-Toh | Understanding vertebrate genome biology and evolution using comparative genomics |
| Coffee |
| 16:00-17:00 | Jens Nielsen | Genome-Scale Metabolic Models: A Bridge between
Bioinformatics and Systems Biology |
| 17:00-18:00 | Paul Horton | Excavating human NUMTs |
| 18:00-19:00 | Michael Levitt | olving the
Recalcitrant Crystal Structure of Group II Chaperonin TRiC/CCT by Mass Spectrometry and Sentinel Correlation Analysis |
| 19:30-24:00 | Conference Dinner at
Medicinska Föreningen (walking distance from the conference venue) |
|
Wed 13 |
| Bioinformatics of chemical biology |
| 09:30-10:00 | Gert Vriend | What can we (not yet) learn from 70 GPCR structures |
| 10:00-10:30 | Raymond Stevens | Understanding Human G-protein Coupled Receptor Structural Diversity and Modularity |
| 10:30-10:45 | David Gloriam | Chemogenomic
Discovery of Allosteric Antagonists at the GPRC6A Receptor |
| Coffee |
| 11:15-11:45 | Helgi Schiöth | The origin of GPCRs, the largest family of membrane bound proteins |
| 11:45-12:15 | Andreas Bender | Using Chemogenomics Approaches to Modulate Biological Systems |
| 12:15-12:30 | Kentaro Tomii | PoSSuM: a database of known and potential ligand-binding sites in proteins |
| LUNCH - visit to scilifelab |
| Using Next generation sequence data |
| 14:00-14:30 | Jeroen Raes | Metagenomics data analysis: from the oceans to the human microbiome |
| 14:30-15:00 | Christopher Quince | Extracting ecological signal from noisy microbiomics data |
| 15:00-15:15 | Johan Bengtsson | Comprehensive Analysis of Antibiotic Resistance Genes in River Sediment, Well
Water and Soil Microbial Communities Using Metagenomic DNA Sequencing |
| 15:15-15:30 | Daniel Edsgärd | Allele specic expression changes after induction of inflammation |
| Coffee |
| 16:00-16:30 | Erik van Nimwegen | Reconstructing transcription regulatory networks in mammals using a
combination of modeling and next-generation sequencing data |
| 16:30-17:00 | Joakim Lundeberg | Sequencing and assembly of the largest and most complex genome to date - the Norway spruce (Picea abies) |
| 17:00-17:30 | Ivo Gut | High-resolution whole-genome analysis and cancer |
| 17:30-19:00 | Poster session (Presentation
by even numbers) |
|
Thu 14 |
| Molecular machines |
| 09:00-09:30 | Martin Weigt | From sequence variability to protein (complex) structure prediction |
| 09:30-10:00 | Burkhard Rost | Evolution teaches protein prediction |
| 10:00-10:15 | Björn Wallner | Modeling a complete voltage-sensor cycle with metal-ion bridges |
| 10:15-10:30 | Joanna M Kasprzak | PyRy3D: a software tool for modelling of large macromolecular complexes |
| Coffee |
| 11:00-11:30 | Ingemar André | Design and Prediction of Protein Self-assembly |
| 11:30-12:00 | Janusz Bujnicki | If There’s an Order in All of This Disorder…: Structural Bioinformatics of the Human
Spliceosomal Proteome |
| 12:00-12:15 | Closing words |
